OpenCMISS::Zinc Namespace Reference

The OpenCMISS::Zinc namespace. More...

Classes
class	Context
	The context is the primary object created for each instance of Zinc. More...
class	Differentialoperator
	Describes the derivative of a field to evaluate. More...
class	Elementbasis
	A set of basis functions that can apply over an element of a given dimension. More...
class	Element
	A single finite element from a mesh. More...
class	Elementtemplate
	A description of element shape and field definitions. More...
class	Elementiterator
	An iterator for looping through all the elements in a mesh. More...
class	Mesh
	A finite element mesh consisting of a set of elements of fixed dimension. More...
class	MeshGroup
	A subset of a master mesh. More...
class	Meshchanges
	Object describing changes to a mesh in a fieldmoduleevent. More...
class	Field
	Base field type: an abstraction of a mathematical field. More...
class	Fielditerator
	An iterator for looping through all the fields in a fieldmodule. More...
class	FieldAlias
	A specialised field type creating a local alias. More...
class	FieldAdd
	A field where the which adds the components of source_field_one and source_field_two. More...
class	FieldPower
	A field where the which calculates the components of source_field_one raised to the power of the components in source_field_two. More...
class	FieldMultiply
	A field where the which multiplies the components of source_field_one and source_field_two. More...
class	FieldDivide
	A field where the which divides the components of source_field_one by source_field_two. More...
class	FieldSubtract
	A field which gives the result of subtracting source_field_two from source_field_one. More...
class	FieldLog
	A field where the field components are the natural logarithm of each component in the source field. More...
class	FieldSqrt
	A field where the field components are the square root of each component in the source field. More...
class	FieldExp
	A field where the field components are the natural exponent of each component in the source field. More...
class	FieldAbs
	A field where the field components are the absolute value of each component in the source field. More...
class	Fieldcache
	Cache for setting domain locations at which fields are evaluated or assigned. More...
class	FieldIdentity
	A field with the single source field. More...
class	FieldComponent
	A field returning a single component of a source field as a scalar. More...
class	FieldConcatenate
	A field which concatenates the components of all source fields, in order, into a single vector. More...
class	FieldIf
	A conditional field with the same number of components as each of the source_fields. More...
class	FieldConstant
	A field with the components specified in the array values. More...
class	FieldStringConstant
	A string constant field with the supplied string value in <string_constant>. More...
class	FieldCoordinateTransformation
	A field which performs a coordinate transformation from the source field values in their coordinate system type into the coordinate system type of this field. More...
class	FieldVectorCoordinateTransformation
class	FieldDerivative
	A field returning the derivative of the field with respect to element xi_index as its primary value. More...
class	FieldCurl
	A field returning the curl of vector_field at location given by coordinate_field. More...
class	FieldDivergence
	A scalar field returning the divergence of vector field within coordinate field. More...
class	FieldGradient
	A field returning the curl of vector_field at location given by coordinate_field. More...
class	FieldFibreAxes
	A "fibre axes" field type which returns a 9-component (3 x 3 vector) field representing an orthonormal coordinate system which is rotated by 3 Euler angles supplied by a fibre field. More...
class	FieldFiniteElement
	A real-valued field defined by element basis. More...
class	FieldEmbedded
	A field returning a value of a source field at an embedded location. More...
class	FieldFindMeshLocation
	A field that computes the location in a mesh. More...
class	FieldNodeValue
	A field which represents and returns node values/derivatives. More...
class	FieldStoredMeshLocation
	A field storing locations within a mesh. More...
class	FieldStoredString
	A field which stores and returns string values at nodes. More...
class	FieldGroup
	A generic group field used for grouping local subobjects. More...
class	FieldImage
	An image-based field giving the pixel colour/intensity values. More...
class	FieldImagefilterBinaryDilate
	A field performing ITK binary dilate image filter on scalar source field image. More...
class	FieldImagefilterBinaryErode
	A field performing ITK binary erode image filter on scalar source field image. More...
class	FieldImagefilterBinaryThreshold
	Image processing derived field type performing the ITK binary threshold filter. More...
class	FieldImagefilterCannyEdgeDetection
	A field returning result of ITK canny edge detection filter on the source field image. More...
class	FieldImagefilterConnectedThreshold
	A field performing ITK connected threshold image filter on scalar source field image. More...
class	FieldImagefilterCurvatureAnisotropicDiffusion
	A field performing ITK curvature anisotropic diffusion image filter on scalar source field image. More...
class	FieldImagefilterDiscreteGaussian
	Image processing derived field type performing the ITK discrete gaussian filter. More...
class	FieldImagefilterHistogram
	Image processing derived field type performing the ITK histogram field. More...
class	FieldImagefilterGradientMagnitudeRecursiveGaussian
	A field performing ITK gradient magnitude recursive gaussian image filter on scalar source field image. More...
class	FieldImagefilterRescaleIntensity
	A field performing ITK rescale intensity image filter on scalar source field image. More...
class	FieldImagefilterMean
class	FieldImagefilterSigmoid
	A field performing ITK sigmoid image filter on scalar source field image. More...
class	FieldImagefilterThreshold
	Image processing derived field type performing the ITK threshold filter. More...
class	FieldAnd
	A field whose component values are 1 if that component of source_field_one AND source_field_two is non-zero, 0 otherwise. More...
class	FieldEqualTo
	A field whose component values are 1 if that component of source_field_one EQUALS that component of source_field_two, 0 otherwise. More...
class	FieldGreaterThan
	A field whose component values are 1 if that component of source_field_one is greater than the component value in source_field_two. More...
class	FieldLessThan
	A field whose component values are 1 if that component of source_field_one is less than the component value in source_field_two. More...
class	FieldOr
	A field whose component values are 1 if that component of source_field_one OR source_field_two is non-zero, 0 otherwise. More...
class	FieldNot
	A field whose component values are 1 if that component of the source_field is zero, 0 otherwise; effectively a component-wise logical not operator. More...
class	FieldXor
	A field whose component values are 1 if that component of source_field_one OR source_field_two is non-zero (but not both), 0 otherwise. More...
class	FieldDeterminant
	A field returning the scalar real determinant of a square matrix source field. More...
class	FieldEigenvalues
	A field returning the N eigenvalues of symmetric N*N component source field. More...
class	FieldEigenvectors
	A field returning the N, N-dimensional eigenvectors computed with the source eigenvalues field. More...
class	FieldMatrixInvert
	A field returning the inverse of N*N symmetric matrix valued source field. More...
class	FieldMatrixMultiply
	A field returning the values resulting from matrix multiplication <source_field1> x <source_field2>, with <number_of_rows> rows in both <source_field1> and the result. More...
class	FieldProjection
	A projection field returning the result of a matrix multiplication with perspective division on the source field vector. More...
class	FieldTranspose
	A field returning the transpose of N*M matrix source_field. More...
class	Fieldmodule
	Container/manager of fields and domains within a region. More...
class	Fieldmoduleevent
	Information about changes to fields and other objects in the field module. More...
class	Fieldmodulecallback
	Base class functor for field module notifier callbacks. More...
class	Fieldmodulenotifier
	Manages individual user notification of changes with a field module. More...
class	FieldNodesetSum
	A field which computes the sum of each source field component over all nodes in the nodeset for which it is defined. More...
class	FieldNodesetMean
	A field which computes the mean of each source field component over all nodes in the nodeset for which it is defined. More...
class	FieldNodesetSumSquares
	A field which computes the sum of the squares of each source field component over all nodes in the nodeset for which it is defined. More...
class	FieldNodesetMeanSquares
	A field which computes the mean of the squares of each source field component over all nodes in the nodeset for which it is defined. More...
class	FieldNodesetMinimum
	A field which computes the minimum of each source field component over all nodes in the nodeset for which it is defined. More...
class	FieldNodesetMaximum
	A field which computes the maximum of each source field component over all nodes in the nodeset for which it is defined. More...
class	FieldSceneviewerProjection
	A field whose values are the 4x4 transformation matrix mapping coordinates between two scene coordinate systems for a scene viewer. More...
class	FieldElementGroup
	A field which defines a subset of elements from a master mesh. More...
class	FieldNodeGroup
	A field which defines a subset of nodes from a master nodeset. More...
class	FieldTimeLookup
	A field whose value equals the source_field evaluated at the time given by time_field, overriding any time prescribed for field evaluation. More...
class	FieldTimeValue
	A field which returns the current time from the supplied time keeper. More...
class	FieldSin
	A field where the components are the sine value (using radians) of the components of the source_field. More...
class	FieldCos
	A field where the components are the cosine value (using radians) of the components of the source_field. More...
class	FieldTan
	A field where the components are the trigonometric tangent value (using radians) of the components of the source_field. More...
class	FieldAsin
	A field where the components are the arcsine value (using radians) of the components of the source_field. More...
class	FieldAcos
	A field where the components are the arccosine value (using radians) of the components of the source_field. More...
class	FieldAtan
	A field where the components are the arctangent value (using radians) of the components of the source_field. More...
class	FieldAtan2
	A field where the components are calculated using the atan2 c function, so that the angle returned (in radians) is the angle between a positive x axis in a plane and the vector (x,y) where x is the source_field_one component and y is the source_field_two component. More...
class	FieldCrossProduct
	A vector field which is the cross product of the source_fields. More...
class	FieldDotProduct
	A scalar field whose value is the dot product of the two supplied source fields, which must have equal numbers of components. More...
class	FieldMagnitude
	A scalar field returning the magnitude of the vector source field. More...
class	FieldNormalise
	A field returning the values of source vector field normalised to unit length. More...
class	FieldSumComponents
	A field which has one component equal to the sum of all components of the source field. More...
class	Font
	Font object controlling attributes of rendering text. More...
class	Fontmodule
	Module managing all fonts. More...
class	Glyph
	A glyph is a static graphics object used to visualise a point in space. More...
class	GlyphAxes
	A specialised glyph type which renders 3-D axes. More...
class	GlyphColourBar
	A specialised glyph type which draws a cylindrical colour bar. More...
class	Glyphmodule
	Module managing all glyphs. More...
class	Graphics
	Base graphics type: produces 3-D graphics visualising domains and fields. More...
class	GraphicsContours
	The contours derived graphics type. More...
class	GraphicsLines
	Lines visualise 1-D elements in the model. More...
class	GraphicsPoints
	Points graphics visualise discrete locations in the model. More...
class	GraphicsStreamlines
	Streamlines visualise the path of a fluid particle tracking along a vector field. More...
class	GraphicsSurfaces
	Surfaces visualise 2-D elements in the model. More...
class	Graphicslineattributes
	Attributes object specifying how lines are visualised. More...
class	Graphicspointattributes
	Attributes object specifying how points are visualised. More...
class	Graphicssamplingattributes
	Graphics attributes object specifying how points are sampled in elements. More...
class	Material
	Zinc materials specify colouring of graphics. More...
class	Materialmodule
	Module managing all materials. More...
class	Node
	Point object used to represent finite element nodes. More...
class	Nodetemplate
	A description of field parameters to define at a node. More...
class	Nodeiterator
	An iterator for looping through all the nodes in a nodeset. More...
class	Nodeset
	A set of nodes or points. More...
class	NodesetGroup
	A subset of a master nodeset. More...
class	Nodesetchanges
	Object describing changes to a nodeset in a fieldmoduleevent. More...
class	Optimisation
	A description of a non-linear optimisation problem. More...
class	Region
	A hierarchical block/namespace owning domains and fields. More...
class	Scene
	Container/manager for graphics visualising a region. More...
class	Scenefilter
	Scene filters determines which graphics are drawn. More...
class	ScenefilterOperator
	An operator OR or AND specific scene filter type. More...
class	Scenefiltermodule
	Module managing all scene filters. More...
class	Scenepicker
	Utility object for picking graphics and model objects. More...
class	Sceneviewerevent
	Information about changes to fields and other objects in the scene viewer. More...
class	Sceneviewercallback
	Base class functor for Sceneviewer notifier callbacks: More...
class	Sceneviewernotifier
	Manages individual user notification of changes with a scene viewer. More...
class	Sceneviewer
	The Zinc sceneviewer is responsible for rendering the graphical Scene. More...
class	Sceneviewermodule
	Module object for creating and managing scene viewers. More...
class	Sceneviewerinput
	Describes a mouse event for processing by the sceneviewer. More...
class	Selectionevent
	Information about changes to the selection group in the scene. More...
class	Selectioncallback
	Base class functor for Selection notifier callbacks: More...
class	Selectionnotifier
	Manages individual user notification of changes to the selection group. More...
class	Spectrumcomponent
	Maps a single component of a data field to colour in a spectrum. More...
class	Spectrum
	Zinc Spectrum maps values of graphics data fields to colours. More...
class	Spectrummodule
	Module managing all spectrums. More...
class	Streamresource
	A description of a resource for reading from or writing to. More...
class	StreamresourceFile
	A derived streamresource describing a file. More...
class	StreamresourceMemory
	A derived stream resource describing a block of memory. More...
class	Streaminformation
	Base type listing resources and options for stream I/O. More...
class	StreaminformationImage
	An image-specific stream information object. More...
class	StreaminformationRegion
	A region-specific stream information object. More...
class	Tessellation
	The tessellation controls the number of polygons or line segments. More...
class	Tessellationmodule
	Module managing all tessellation objects. More...
class	Timekeeper
	The timekeeper synchronises a current time across Zinc objects. More...
class	Timekeepermodule
	Module for finding and managing timekeepers. More...
class	Timenotifierevent
	Information about changes to the timekeeper/time. More...
class	Timenotifiercallback
	Base class functor for Timenotifier callbacks. More...
class	Timenotifier
	Description of timing requirements and for setting up time callbacks. More...
class	TimenotifierRegular
	A derived timenotifier type which requests notifications at regular intervals. More...
class	Timesequence
	A non-decreasing list of times at which nodal parameters can be stored. More...

Enumerations
enum	Scenecoordinatesystem {   SCENECOORDINATESYSTEM_INVALID = CMZN_SCENECOORDINATESYSTEM_INVALID, SCENECOORDINATESYSTEM_LOCAL = CMZN_SCENECOORDINATESYSTEM_LOCAL, SCENECOORDINATESYSTEM_WORLD = CMZN_SCENECOORDINATESYSTEM_WORLD, SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FILL = CMZN_SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FILL,   SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_CENTRE = CMZN_SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_CENTRE, SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_LEFT = CMZN_SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_LEFT, SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_RIGHT = CMZN_SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_RIGHT, SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_BOTTOM = CMZN_SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_BOTTOM,   SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_TOP = CMZN_SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_TOP, SCENECOORDINATESYSTEM_WINDOW_PIXEL_BOTTOM_LEFT = CMZN_SCENECOORDINATESYSTEM_WINDOW_PIXEL_BOTTOM_LEFT, SCENECOORDINATESYSTEM_WINDOW_PIXEL_TOP_LEFT = CMZN_SCENECOORDINATESYSTEM_WINDOW_PIXEL_TOP_LEFT }
enum	Status { ERROR_MEMORY = CMZN_ERROR_MEMORY, ERROR_ARGUMENT = CMZN_ERROR_ARGUMENT, ERROR_GENERAL = CMZN_ERROR_GENERAL, OK = CMZN_OK }

Functions
bool	operator== (const Element &a, const Element &b)
bool	operator== (const Mesh &a, const Mesh &b)
bool	operator== (const Field &a, const Field &b)
FieldAdd	operator+ (const Field &operand1, const Field &operand2)
FieldMultiply	operator* (const Field &operand1, const Field &operand2)
FieldDivide	operator/ (const Field &operand1, const Field &operand2)
FieldSubtract	operator- (const Field &operand1, const Field &operand2)
FieldLog	log (const Field &sourceField)
FieldSqrt	sqrt (const Field &sourceField)
FieldExp	exp (const Field &sourceField)
FieldAbs	abs (const Field &sourceField)
FieldAnd	operator&& (const Field &operand1, const Field &operand2)
FieldGreaterThan	operator> (const Field &operand1, const Field &operand2)
FieldLessThan	operator< (const Field &operand1, const Field &operand2)
FieldOr	operator|| (const Field &operand1, const Field &operand2)
FieldNot	operator! (const Field &operand)
bool	operator== (const Fieldmodule &a, const Fieldmodule &b)
bool	operator== (const Node &a, const Node &b)
bool	operator== (const Nodeset &a, const Nodeset &b)
bool	operator== (const Region &a, const Region &b)
bool	operator== (const Scene &a, const Scene &b)
bool	operator== (const Timesequence &a, const Timesequence &b)

Detailed Description

The OpenCMISS::Zinc namespace.

This is the OpenCMISS::Zinc namespace, all libZinc cpp APIs are in this namespace.

Enumeration Type Documentation

enum OpenCMISS::Zinc::Scenecoordinatesystem

Enumerated type for identifying scene and window coordinate systems. Graphics are drawn in one of these coordinate systems.

Enumerator
SCENECOORDINATESYSTEM_INVALID	Unspecified coordinate system.
SCENECOORDINATESYSTEM_LOCAL	The local coordinate system of a scene, subject to its own transformation matrix and those of all parent scenes up to the root region of the scene in use, which are world coordinates.
SCENECOORDINATESYSTEM_WORLD	The world coordinate system which scene viewer viewing parameters are specified in, and which scene transformations (giving local coordinates) are ultimately relative to.
SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FILL	Distorted normalised window coordinate system which varies from -1 to +1 from left to right, bottom to top, and far to near of window. If window is non-square, graphics in this space appear stretched.
SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_CENTRE	Undistorted normalised window coordinate system which varies from -1 to +1 from far to near, and from -1 to +1 from left-to-right and bottom-to-top in largest square that fits in centre of window.
SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_LEFT	Undistorted normalised window coordinate system which varies from -1 to +1 from far to near, and from -1 to +1 from left-to-right and bottom-to-top in largest square that fits in left of window.
SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_RIGHT	Undistorted normalised window coordinate system which varies from -1 to +1 from far to near, and from -1 to +1 from left-to-right and bottom-to-top in largest square that fits in right of window.
SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_BOTTOM	Undistorted normalised window coordinate system which varies from -1 to +1 from far to near, and from -1 to +1 from left-to-right and bottom-to-top in largest square that fits in bottom of window.
SCENECOORDINATESYSTEM_NORMALISED_WINDOW_FIT_TOP	Undistorted normalised window coordinate system which varies from -1 to +1 from far to near, and from -1 to +1 from left-to-right and bottom-to-top in largest square that fits in top of window.
SCENECOORDINATESYSTEM_WINDOW_PIXEL_BOTTOM_LEFT	Window coordinate system in pixel units with 0,0 at centre of the bottom-left pixel in display window, and depth ranging from far = -1 to near = +1.
SCENECOORDINATESYSTEM_WINDOW_PIXEL_TOP_LEFT	Window coordinate system in pixel units with 0,0 at centre of the top-left pixel in display window, and depth ranging from far = -1 to near = +1. Y coordinates are negative going down the window.

enum OpenCMISS::Zinc::Status

Enumerator
ERROR_MEMORY	Failed to allocate memory.
ERROR_ARGUMENT	Invalid argument(s) passed to API function.
ERROR_GENERAL	Unspecified error occurred. Can include invalid argument(s) for old APIs.
OK	Successful return